Episodic Ataxia (EA) pedigree: Haplotype
Quick View of the Haplotype Analysis from SimWalk2 2.91
Below you will find a quick view of the best haplotype vector found for each
pedigree analyzed. Specifically, for each pedigree the quick view includes
one line for each founder, listing their name, sex and trait value (if any).
For each non-founder there is a set of two lines and then a blank line.
The data lines contain the following information, in order: the letter
'M' or 'P' (indicating whether this is the maternal or paternal haplotype),
the child's name, their mother's name, their father's name, their sex,
their trait value (if any), the haplotype's 'source information',
a series of letters 'R' (one for each recombination in the haplotype),
the run label, the number of the pedigree, and finally the pedigree name.
The 'source information' for a haplotype is a string of digits, one for each
allele in the haplotype, indicating the grandparental source of the allele.
A '1' indicates the corresponding allele came from a grandmaternal haplotype,
and a '2' indicates grandpaternal origin. Thus any transition from a '1' to a
'2', or vice versa, in either the maternal or paternal haplotypes, implies
a recombination event within that haplotype.
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The results for the pedigree named: 20
which is pedigree number: 001
This haplotype run has the label: 11
The number of individuals is: 29
M 1 1000 1001 M 2 111111111 11 001 20
P 1 1000 1001 M 2 222222222 11 001 20
1001 M 1
M 1000 2001 2002 F 2 222222222 11 001 20
P 1000 2001 2002 F 2 111111111 11 001 20
M 100 1000 1001 M 1 222222222 11 001 20
P 100 1000 1001 M 1 222211222 RR 11 001 20
2002 M 1
2001 F
M 1002 2001 2002 M 1 111111111 11 001 20
P 1002 2001 2002 M 1 111111111 11 001 20
M 1006 2001 2002 F 2 222222222 11 001 20
P 1006 2001 2002 F 2 111111111 11 001 20
1007 M 1
M 1008 2001 2002 F 2 222222222 11 001 20
P 1008 2001 2002 F 2 222222222 11 001 20
1009 M 1
199 F 1
M 1010 2001 2002 F 2 222222222 11 001 20
P 1010 2001 2002 F 2 222222222 11 001 20
1011 M 1
M 102 1000 1001 M 2 111111111 11 001 20
P 102 1000 1001 M 2 111111111 11 001 20
103 F 1
104 F 1
M 113 1006 1007 F 2 111122222 R 11 001 20
P 113 1006 1007 F 2 222222222 11 001 20
M 114 1006 1007 F 2 111111111 11 001 20
P 114 1006 1007 F 2 111122222 R 11 001 20
M 115 1008 1009 M 2 111111111 11 001 20
P 115 1008 1009 M 2 111111111 11 001 20
M 116 1010 1011 M 2 111111111 11 001 20
P 116 1010 1011 M 2 111111111 11 001 20
M 117 1010 1011 F 1 222222222 11 001 20
P 117 1010 1011 F 1 222222222 11 001 20
M 9099 199 100 M 1 222222222 11 001 20
P 9099 199 100 M 1 222222222 11 001 20
M 9098 199 100 F 111111111 11 001 20
P 9098 199 100 F 111111111 11 001 20
M 9097 199 100 M 1 222222222 11 001 20
P 9097 199 100 M 1 222222222 11 001 20
M 9003 103 102 M 2 111111111 11 001 20
P 9003 103 102 M 2 111111111 11 001 20
M 9004 103 102 M 1 222222222 11 001 20
P 9004 103 102 M 1 111122222 R 11 001 20
M 9005 104 1 F 2 111111111 11 001 20
P 9005 104 1 F 2 111111111 11 001 20
M 9006 104 1 M 111111111 11 001 20
P 9006 104 1 M 222222222 11 001 20
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