[68] "An
siRNA screen identifies the U2 snRNP
spliceosome as a host restriction
factor for recombinant
adeno-associated viruses" C. A.
Schreiber, T. Sakuma, Y. Izumiya, S.
J. Holditch, R. D. Hickey, R. K.
Bressin, U. Basu, K. Koide, A. Asokan,
and Y. Ikeda*, PLoS Pathog. 2015,
11, e1005082. Link
[67]
"Fluorometric imaging methods for
palladium and platinum and the use of
palladium for imaging biomolecules" M.
T. Tracey, D. Pham, and K. Koide*, Chem.
Soc. Rev. 2015,
44, 4769-4791. Link
[66]
"Regulation of HPV16 E6 and MCL1 by
SF3B1 inhibitor in head and neck
cancer cells" Y. Gao, S. Trivedi, R.
L. Ferris,* and K. Koide*, Sci.
Rep. 2014, 4,
6098. Link
[65]
"Development of a sustainable
enrichment strategy for quantification
of mercury ions in complex samples at
the sub-parts per billion level" M. T.
Tracey and K. Koide*, Ind. Eng.
Chem. Res. 2014,
53, 14565-14570. Link
[64] "New
Trends in Cross-Coupling: Theory and
Applications" 2014, Chapter 16, K.
Koide Link
[63]
"Total synthesis and biological
studies of TMC-205 and analogs as
anticancer agents and activators of
SV40 promoter" Y. Gao, S. Osman, and
K. Koide*, ACS Med. Chem. Lett. 2014,
5, 863-867. Link
[62]
"Time-insensitive fluorescent sensor
for human serum albumin and its
unusual red shift" S. E. Smith, J. M.
Williams, S. Ando, and K. Koide*, Anal.
Chem. 2014, 86,
2332-2336. Link
[61] "A
high-throughput method to detect
palladium in ores" J. M. Williams and
K. Koide*, Ind. Eng. Chem. Res. 2013,
52, 8612-8615. Link
[60]
"Chemical perturbation of Mcl-1
pre-mRNA splicing to induce apoptosis
in cancer cells" Y. Gao and K. Koide*,
ACS Chem. Biol. 2013,
8, 895-900. Link
[59]
"Rapid analysis of residual palladium
in pharmaceutical development using a
catalysis-based fluorometric method"
X. Bu,* K. Koide,*, E. J. Carder, and
C. J. Welch* Org. Process Res.
Dev.2013, 17,
108?113. Link
[58]
"Comparison of splicing factor 3b
inhibitors in human cells" Y. Gao, A.
Vogt, C. J. Forsyth, and K. Koide*, ChemBioChem
2013, 14,
49?52. Link
[57]
"Ruthenium-catalyzed olefin metathesis
after tetra-n-butylammonium
fluoride-mediated desilylation" S.
Osman and K. Koide*, Tetrahedron
Lett. 2012, 53,
6637?6640. Link
[56]
"SF3B1 haploinsufficiency leads to
formation of ring sideroblasts in
myelodysplastic syndromes" V.
Visconte, H. J. Rogers, J. Singh, J.
Barnard, M. Bupathi, F. Traina, J.
McMahon, H. Makishima, H. Szpurka, A.
Jankowska, A. Jerez, M. A. Sekeres, Y.
Saunthararajah, A. S. Advani, E.
Copelan, H. Koseki, K. Isono, R. A.
Padgett, S. Osman, K. Koide, C.
O?Keefe, J. P. Maciejewski, and R V.
Tiu*, Blood 2012,
120, 3173?3186. Link
[55]
"One-step synthesis of a fluorescein
derivative and mechanistic studies" M.
P. Cook, S. Ando, and K. Koide*, Tetrahedron
Lett. 2012, 53,
5284?5286. Link
[54] "A
highly sensitive fluorescence method
reveals the presence of palladium in a
cross-coupling reaction mixture not
treated with transition metals" K.
Inamoto,* L. D. Campbell, T. Doi, and
K. Koide*, Tetrahedron Lett. 2012,
53, 3147?3148. Link
[53]
"Detection of trace palladium in
flasks and metal reagents using a
fluorogenic Tsuji-Trost reaction" D.
Li, L. D. Campbell, B. A. Austin, and
K. Koide*, ChemPlusChem 2012,
77, 281?283. Link
[52]
"Amine-promoted ?-elimination of a
?-aryloxy aldehyde for fluorogenic
chemodosimeters" A. K. Leslie, D. Li,
and K. Koide*, J. Org. Chem. 2011,
76, 6860?6865. Link
[51] "The
use of 3,5,4'-tri-O-acetylresveratrol
as a potential pro-drug for
resveratrol protects mice from
?-irradiation?induced death" K.
Koide,* S. Osman, A. L. Garner, F.
Song, T. Dixon, J. S. Greenberger, and
M. W. Epperly* ACS Med. Chem.
Lett. 2011, 2,
270-274. Link
One
More
Reason to Guzzle Red Wine (Newsweek
Magazine May 23&30, 2011 issue)
[50]
"Diastereoselective synthesis of
diketopiperazine bis-?,?-epoxides" S.
Ando, A. L. Grote, and K. Koide, J.
Org. Chem. 2011,
76, 1155-1158. Link
[49]
"Development and applications of
fluorogenic probes for mercury(II)
based on vinyl ether oxymercuration"
S. Ando and K. Koide, J. Am.
Chem. Soc. 2011,
133, 2556-2566. Link
[48]
"Structural requirements for the
antiproliferative activity of pre-mRNA
splicing inhibitor FR901464" S. Osman,
B. J. Albert, Y. Wang, M. Li, N. L.
Czaicki, K. Koide, Chem.-Eur. J.
2011, 17,
895?904. Link
[47]
"Evaluation of FR901464 analogues in
vitro and in vivo" S. Osman, W. R.
Waud, G. S. Gorman, B. W. Day, and K.
Koide, Med. Chem. Commun. 2011,
2, 38-43. Link
[46]
"Studies toward an ideal fluorescence
method to measure palladium in
functionalized organic molecules:
effects of sodium borohydride,
temperature, phosphine ligand, and
phosphate ions on kinetics" F. Song,
E. J. Carder, C. C. Kohler, and K.
Koide, Chem.-Eur. J. 2010,
16, 13500-13508. Link
[45]
"Meayamycin inhibits pre-mRNA splicing
and exhibits picomolar activity
against multidrug resistant cells" B.
J. Albert, P. A. McPherson, K.
O'Brien, N. L. Czaicki, V. DeStefino,
S. Osman, M. Li, B. W. Day, P. J.
Grabowski, M. Moore, A. Vogt, K.
Koide, Mol. Cancer Ther. 2009,
8, 2308-2318. Link
[44]
"Specific fluorogenic probes for ozone
in biological and atmospheric samples"
A. L. Garner, C. M. St. Croix, B. R.
Pitt, G. D. Leikauf, S. Ando, and K.
Koide, Nature Chem. 2009,
1, 316-321. Link
New
probe
promises ozone answers (Chemistry
World)
Pitt
chemist
is developing a bright idea
(Pittsburgh Post-Gazette)
News
in
brief (Nature Methods)
[43]
"Enhancement of a catalysis-based
fluorometric detection method for
palladium through rational fine-tuning
of the palladium species" A. L.
Garner, F. Song, K. Koide, J. Am.
Chem. Soc. 2009,
131, 5163?5171. Link
Green
Chemistry
[42]
"External compression-induced fracture
patterning on the surface of
poly(dimethylsiloxane) cubes and
microspheres" T. Uchida, K. L. Mills,
C.-H. Kuo, W. Roh, Y.-C. Tung, A. L.
Garner, K. Koide, M. D. Thouless, S.
Takayama, Langmuir 2009,
25, 3102-3107. Link
[41]
"Studies of a fluorogenic probe for
palladium and platinum leading to a
palladium-specific detection method"
A. L. Garner, K. Koide, Chem.
Commun. 2009,
86-88. Link
[40]
"Fluorescent method for platinum
detection in buffers and serums for
cancer medicine and occupational
hazards" A. L. Garner, K. Koide, Chem.
Commun. 2009,
83-85. Link
[39]
"Oxidation-resistant fluorogenic probe
for mercury based on alkyne
oxymercuration" F. Song, S. Watanabe,
P. E. Floreancig, K. Koide, J.
Am. Chem. Soc. 2008,
130, 16460-16461. Link
[38]
"Oxidation state-specific fluorescent
method for palladium(II) and
platinum(IV) based on the catalyzed
aromatic Claisen rearrangement" A. L.
Garner, K. Koide, J. Am. Chem.
Soc. 2008, 130,
16472-16473. Link
[37]
"Cyclic acetal formation between
2-pyridinecarboxaldehyde and
?-hydroxy-?,?-acetylenic esters" S.
Osman, K. Koide, Tetrahedron
Lett. 2008, 49,
6550-6552. Link
[36]
"Scalable and concise synthesis of
dichlorofluorescein derivatives
displaying tissue permeation in live
zebrafish embryos" K. Koide, F. Song,
E. D. de Groh, A. L. Garner, V. D.
Mitchell, L. A. Davidson, N. A.
Hukriede, ChemBioChem 2008,
9, 214-218. Link
[35]
"Zirconium-promoted epoxy
rearrangement-alkynylation sequence"
B. J. Albert, K. Koide, J. Org.
Chem. 2008, 73,
1093-1098. Link
Best
Synthetic
Methods: Carbon-Carbon Bond
Construction
[34]
"Solid-phase olefin cross-metathesis
promoted by a linker" A. L. Garner, K.
Koide, Org. Lett. 2007,
9, 5235?5238. PDF
C&E
News
[33]
"Synthesis and biological activity of
antitumor natural product FR901464 and
its analogue" K. Koide, Farumashia
2007, 43,
1183?1188. Link
[32] "How
rapidly do epoxides non-specifically
form covalent bonds with thiols in
water?" B. J. Albert, K. Koide, ChemBioChem
2007, 8,
1912?1915 PDF
Cover
page
[31] "A
highly sensitive fluorescent sensor
for palladium based on the allylic
oxidative insertion mechanism" F.
Song, A. L. Garner, K. Koide, J.
Am. Chem. Soc. 2007,129,
12354?12355.Link
C&E
News
[30]
"Fluorescent sensors for specific RNA:
A general paradigm using chemistry and
combinatorial biology" B. A. Sparano,
K. Koide, J. Am. Chem. Soc. 2007,129,
4785?4794. Link
[29]
"Sodium bicarbonate-catalyzed
stereoselective isomerizations of
electron-deficient propargylic
alcohols to (Z)-enones" J. P.
Sonye, K. Koide, J. Org. Chem. 2007,
72. 1846-1848. Link
[28]
"Total synthesis, fragmentation
studies, and
antitumor/antiproliferative activities
of FR901464 and its low picomolar
analogue" B. J. Albert, A.
Sivaramakrishnan, T. Naka, N. L.
Czaicki, K. Koide, J. Am. Chem.
Soc. 2007, 129.
2648-2659.Link
[This article was highlighted on the
National Public Radio, in Nature
(2007, 445, p798) Link
, Pitt Chronicle Link
, The Pitt News Link
, The Carnegie Mellon University
Tartan Link
, Insider R&D, BioSpace, United
Press International, Medilexicon Link
]
[27]
"Review: Total syntheses of FR901464"
K. Koide, B. J. Albert, J. Synth.
Org. Chem. Jpn. 2007,
65. 119?126 [PDF file
available upon request].
[26] "A
new paradigm for the development of
fluorescent RNA imaging technology
using synthetic molecules" K. Koide, American
Biotechnology Laboratory 2006,
24, 8?10 [PDF file available
upon request].
[25]
"Base-catalyzed stereoselective
isomerization of electron-deficient
propargylic alcohols to E-enones"
J. P. Sonye, K. Koide, J. Org.
Chem. 2006, 71.
6254?6257. Link
[24]
"Total synthesis of FR901464, an
antitumor agent that regulates the
transcription of oncogenes and tumor
suppressor genes" B. J. Albert, A.
Sivaramkrishnan, T. Naka, K. Koide, J.
Am. Chem. Soc. 2006,
128. 2792?2793. Link
[23]
"Organic base-catalyzed
stereoselective isomerizations of
4-hydroxy-4-phenyl-but-2-ynoic acid
methyl ester to (E)- and (Z)-4-oxo-4-phenyl-but-2-enoic
acid methyl esters" J. P. Sonye, K.
Koide, Synth. Commun. 2006,
36, 599?602. Link
[22] "On
the mechanism of DABCO-catalyzed
stereoselective isomerization of
g-hydroxy-a,b-alkynoates to
gamma-oxo-alpha,beta-(E)-alkenoates"
J.
P. Sonye, K. Koide, Org. Lett.
2006, 8,
199?202. Link
[21] "A
strategy for the development of small
molecule-based sensors that strongly
fluoresce when bound to a specific
RNA" B. A. Sparano, K. Koide, J.
Am. Chem. Soc. 2005,
127, 14954?14955.
(Ranked 6th in the "Most-Accessed
Articles: October?December, 2005"
list) Link
[20]
"Synthesis of a C4-epi C1?C6 fragment
of FR901464 using a novel
bromolactolization" B. J. Albert, K.
Koide, Org. Lett. 2004,
6, 3655?3658.Link
[19]
"Effect of binding and conformation on
fluorescence quenching in new
2',7'-dichlorofluorescein derivatives"
B. A. Sparano, S. P. Shahi, K. Koide,
Org. Lett., 2004,
6, 1947?1949. Link
[18] "Trans-selective
conversions of
gamma-hydroxy-alpha,beta-alkynoic
esters to g-hydroxy-a,b-alkenoic
esters" C. T. Meta, K. Koide, Org.
Lett. 2004, 6,
1785?1787. Link
[17] "A
mild method for the preparation of
gamma-hydroxy-alpha,beta-acetylenic
esters" S. P. Shahi, K. Koide, Angew.
Chem. Int. Ed. 2004,
43, 2525?2527. Link
[16] "A
novel and simple method to prepare
g-hydroxy-a,b-(E)-alkenoic
esters from g-keto-alkynoic esters" T.
Naka, K. Koide, Tetrahedron Lett.
2003, 44,
443?445. Link
Graduate and Postdoctoral Work (1-15):
[15] "A
synthetic library of cell-permeable
molecules", K. Koide, J. M.
Finkelstein, Z. Ball, G. L. Verdine, J.
Am. Chem. Soc. 2001,
123, 398. Link
[14]
"Inhibition of protein kinases by
balanol: Specificity within the
serine/threonine protein kinase
sub-family", J. Setyawan, K. Koide, T.
C. Diller, M. E. Bunnage, S. S.
Taylor, K. C. Nicolaou, L. L. Brunton,
Mol. Pharm. 1999,
56, 370.
[13]
"Crystal structure of the potent
natural product inhibitor balanol in
complex with the catalytic subunit of
cAMP-dependent protein kinase", N.
Narayana, T. C. Diller, K. Koide, M.
E. Bunnage, K. C. Nicolaou, L. L.
Brunton, N.-H. Xuong, L. F. Ten Eyck,
S. S. Taylor, Biochemistry 1999,
38, 2367.
[12] "Glycosyl
2-pyridinecarboxylate as an effective
glycosyl donor: Glycosidation of
mannose, 2-azidosugar, and
2-deoxysugar into disaccarides", H.
Furukawa, K. Koide, K. Takao, S.
Kobayashi, Chem. Pharm. Bull.
1998, 46,
1244.
[11]
"Synthetic studies on maduropeptin
chromophore. 2. Synthesis
of the madurosamine aryl amide and the
C1?-C9? fragments", K. C. Nicolaou, K.
Koide, J. Xu, M. H. Izraelewicz, Tetrahedron
Lett. 1997, 38,
3671.
[10] "Synthetic
studies on maduropeptin chromophore.
1. Construction of the aryl ether and
attempted synthesis of the [7.3.0]
bicyclic system", K. C. Nicolaou, K.
Koide, H. Khatuya, Tetrahedron
Lett. 1997, 38,
3667.
[9]
"Glycosyl
fluoride for glycosidation promoted by
a catalytic amount of gallium
reagent", K. Koide, M. Ohno, S.
Kobayashi, Synthesis 1996,
1175.
[8]
"Molecular design and biological
activity of potent and selective
protein kinase inhibitors related to
balanol", K. Koide, M. E. Bunnage, L.
Gomez Paloma, J. R. Kanter, S. S.
Taylor, L. L. Brunton, K. C. Nicolaou,
Chem. Biol. 1995,
2, 601.
[7]
"Total
synthesis of balanol and designed
analogues", K. C. Nicolaou, K. Koide,
M. E. Bunnage, Chem. Eur. J.
1995, 1,
454.
[6]
"Total
synthesis of rapamycin", K. C.
Nicolaou, A. D. Piscopio, P.
Bertinato, N. Minowa, T. K.
Chakraborty, K. Koide, Chem.
Eur. J. 1995,
1, 316.
[5]
"Total
synthesis of truncated brevetoxin B
[AFGHIJK]", K. C. Nicolaou, J. Tiebes,
E. A. Theodorakis, F. P. J. T. Rutjes,
K. Koide, M. Sato, E. Untersteller, J.
Am. Chem. Soc. 1994,
116, 9371.
[4]
"Total
synthesis of balanol", K. C. Nicolaou,
M. E. Bunnage, K. Koide, J. Am.
Chem. Soc. 1994,
116, 8402.
[3]
"A
highly convergent strategy towards
rapamycin. Stereoselective
construction of the
C8-C18 fragment", A. D. Piscopio,
N. Minowa, T. K. Chakraborty, K.
Koide, P. Bertinato, K. C. Nicolaou, J.
Chem. Soc. Chem. Commun. 1993,
7, 617.
[2]
"A
new glycosylation reaction based on a
remote activation concept - Glycosyl
2-pyridinecarboxylate as a novel
glycosyl donor.", K. Koide, M.
Ohno, S. Kobayashi Tetrahedron
Lett. 1991, 32,
7065.
[1]
"Gallium
reagents in organic synthesis:
Dimethylgallium chloride and triflate
as activators in glycosidation using
glycopyranosyl fluorides", S.
Kobayashi, K. Koide, M. Ohno, Tetrahedron
Lett. 1990, 31,
2435.
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