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Group Meetings 08/1/8 Zhibao 07/12/11 Sunghee 07/12/4 Kui 07/11/20 Chunrong Jia rehearsal for proposals 07/11/13 Shuya identifying correlated genes across studies 07/11/6 Zhiboa module-based prediction model 07/10/30 Jia Meta-analysis of microarray data 07/10/23 Chunrong cross-platform prediction 07/10/16 Sunghee Correlation of extreme values 07/10/2 Kui Multi-resolution clustering 07/9/25 Shuya review paper 07/9/18 Zhibao module-based prediction model 07/9/11 Jia meta-analysis in microarray 07/9/4 Chunrong cross-dataset prediction and improved DE gene detection method 07/8/27 Sunghee extreme value correlation and identify correlated genes across species 07/8/20 George evolution of gene identifiers and issues in gene matching across data sets 07/8/13 Kui Shen improved tight clustering/multi-resolution clustering 07/8/6 Sunghee extreme value correlation and identify correlated genes across species 07/7/16 Jia Li meta-analysis in microarray 07/7/9 Zhibao robust prediction in microarray 07/7/2 Chunrong cross-dataset prediction in microarray 07/5/18 Sunghee The connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes and Disease. Science. 2006 07/5/11 Chunrong From signature to models: understanding cancer using microarrays. Nature Genetics. 2005 07/5/4 Jia A module map showing conditional activity of expression modules in cancer. Nature Genetics. 2004 07/4/13 Sunghee analysis on human and mouse depression; simulation on extreme correlation 07/4/6 Zhibao a robust prediction method 07/3/30 Joshua preparing microarray data packages and annotations in Bioconductor 07/3/23 Jia update on meta-analysis project 07/2/16 Joshua review paper: Bayesian models for pooling microarray studies with multiple sources of replications. 07/2/9 George Quantile map: visualizing and summarizing patterns of multiple distributions with Fisher information and empirical Bayes. 07/2/2 Chunrong review paper: Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. 07/1/26 Sunghee review paper: Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. 07/1/19 Jia review paper: Statistical issues and methods for meta-analysis of microarray data: a case study in prostate cancer. Meta-analysis ofmicroarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. 06/12/18 Jia Sunghee review NBT MAQC paper: Using RNA sample titrations to assess microarray platform performance and normalization techniques. review NBT MAQC paper: Evaluation of DNA microarray results with quantitative gene expression platforms. 06/11/27 George Statistical integrative analysis of multiple expression profiles review NAR paper (Chunrong): Evaluation of gene expression measurements from commercial microarray platforms. 06/11/20 Zhibao update on KNN.e imputation review NBT MAQC paper (George): The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements 06/11/06 Jia gene selection in classification of microarray data 06/10/30 Sunghee Metastasis of ovarian and endometrial cancer in expression profiles 06/10/16 Chunrong Cross-organ classification analysis on expression profiles of liver and prostate cancer 06/10/02 George Selection of missing value imputation methods in microarray 06/09/25 Jia Increasingly exhaustive gene/covariate selection 06/09/18 Chunrong KNN-SAM 06/09/11 Zhibao Correlation-based KNN in missing value imputation 06/08/30 Sunghee Analysis of human depression data 06/08/03 Chunrong Meta-analysis on prostate and lung cancer data 06/07/13 George Summary of all projects. Penalized and weighted K-means.