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PubMed Tutorial
Online Literature Sources for Evidence-Based Medicine
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Links in this topic:
Citation Matcher
Journal Browser
Clinical Queries
Email the instructors:
Barbara Folb
Patricia Friedman
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Using other PubMed Features
Citation Matcher
The Citation Matcher allows you to take incomplete citations and match them to records in PubMed.
Principles:
- Any one part of a citation can be used to retrieve matching documents, but having two or more pieces of information increases the chances you will find the record you want.
- A Date can be entered as a year or with months and days indicated. In general, you will get better results only using the year.
- It is best to leave off the author's middle initial if you don't know whether it is used in the publication. Enter the name like this: Tallman M. It will retrieve any records that include a middle initial. One exception - if the author has an extremely common last name, the middle initial may be needed to narrow down the results.
Examples:
- Complete the following citation: author: Levy J journal: The Journal of Infectious Diseases publication year: 2000
- Click on Single Citation Matcher in the blue bar to the left of the PubMed screen.
- Click in the Journal entry box and type The Journal of Infectious Diseases.
- Click in the Date entry box and type 2000.
- Click in the Author entry box and type Levy J.
- Click on the Search button. Your search is run, and all matching citations are displayed.
- How many publications were indexed in MEDLINE that were published in 1998 by the author Tallman M?
- Click on Single Citation Matcher in the blue bar to the left of the PubMed screen.
- Click in the Date entry box and type 1998.
- Click in the Author entry box and type Tallman M.
- Click on the Search button. Your search is run, and all matching citations are displayed.
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Journal Browser
The Journal Browser contains information about all journals indexed in PubMed.
Principles:
- The Journal Browser can be searched by full journal title, words occurring in a title, ISSN, or MEDLINE journal abbreviation.
- A search on a word or phase will find all journals that contain it anywhere in the title.
- Two links are created for each journal retrieved. One will take you to a PubMed search for that journal, the other to more information about the journal and its publisher.
- Entering the MEDLINE abbreviation for a journal title in the Journal Browser will retrieve the full title, which appears no other place in PubMed.
Example:
- Search for all journals with the word Cancer in the title
- Access the Journal Browser by clicking on Journal Browser in the blue bar to the left of the screen under PubMed Services.
- Enter cancer in the search entry box.
- In the resulting list, choose one of the titles and click on the ISSN. Examine the information given.
- Return to the results list by hitting the Back button until you get there.
- Click on the abbreviated title for one of the journals in the results list. A PubMed search will run on that journal title.
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Clinical Queries
The Clinical Queries feature uses built in search statements in combination with your topic to find articles of clinical relevance.
Principles:
- Four search categories are available: therapy, diagnosis, etiology, and prognosis
- Two levels of emphasis are available: sensitivity or specificity. Sensitivity will retrieve more records, specificity with find less.
- You may use Boolean operators in the search you enter.
Examples:
- Search for articles on diagnosis of rocky mountain spotted fever. Try both levels of emphasis.
- Click on Clinical Queries in the blue bar to the left of the screen.
- At the next screen, click on the circle in front of the word Diagnosis.
- Click on the circle in front of sensitivity.
- Type rocky mountain spotted fever in the search box.
- Click on search. Examine the results.
- Click on the Back button until you return to the Clinical Queries screen.
- Click on the circle in front of specificity. Leave everything else the same.
- Click on Search. Examine the results.
- Using the History feature, compare the results of the two searches.
- Search for records on therapy for major depression in the elderly. Devise your own search strategy.
Hint: Both major depression and elderly are concepts that can be represented multiple ways. Try different terms and see what works best.
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